diff --git a/spring-boot-tools/spring-boot-maven-plugin/src/main/java/org/springframework/boot/maven/AbstractDependencyFilterMojo.java b/spring-boot-tools/spring-boot-maven-plugin/src/main/java/org/springframework/boot/maven/AbstractDependencyFilterMojo.java
index 4301dea434..0cb0ee4a27 100644
--- a/spring-boot-tools/spring-boot-maven-plugin/src/main/java/org/springframework/boot/maven/AbstractDependencyFilterMojo.java
+++ b/spring-boot-tools/spring-boot-maven-plugin/src/main/java/org/springframework/boot/maven/AbstractDependencyFilterMojo.java
@@ -1,5 +1,5 @@
 /*
- * Copyright 2012-2016 the original author or authors.
+ * Copyright 2012-2017 the original author or authors.
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -16,6 +16,7 @@
 
 package org.springframework.boot.maven;
 
+import java.util.Iterator;
 import java.util.List;
 import java.util.Set;
 import java.util.StringTokenizer;
@@ -89,14 +90,29 @@ public abstract class AbstractDependencyFilterMojo extends AbstractMojo {
 	@SuppressWarnings("unchecked")
 	protected Set<Artifact> filterDependencies(Set<Artifact> dependencies,
 			FilterArtifacts filters) throws MojoExecutionException {
+		List<ArtifactsFilter> artifactsFilters = filters.getFilters();
 		try {
-			return filters.filter(dependencies);
+			for (ArtifactsFilter filter : artifactsFilters) {
+				Set<Artifact> result = filter.filter(dependencies);
+				applyFiltering(dependencies, result);
+			}
+			return dependencies;
 		}
 		catch (ArtifactFilterException e) {
 			throw new MojoExecutionException(e.getMessage(), e);
 		}
 	}
 
+	private void applyFiltering(Set<Artifact> original, Set<Artifact> filtered) {
+		Iterator<Artifact> iterator = original.iterator();
+		while (iterator.hasNext()) {
+			Artifact element = iterator.next();
+			if (!filtered.contains(element)) {
+				iterator.remove();
+			}
+		}
+	}
+
 	/**
 	 * Return artifact filters configured for this MOJO.
 	 * @param additionalFilters optional additional filters to apply
diff --git a/spring-boot-tools/spring-boot-maven-plugin/src/test/java/org/springframework/boot/maven/DependencyFilterMojoTests.java b/spring-boot-tools/spring-boot-maven-plugin/src/test/java/org/springframework/boot/maven/DependencyFilterMojoTests.java
index e4b862f814..daa49766ae 100644
--- a/spring-boot-tools/spring-boot-maven-plugin/src/test/java/org/springframework/boot/maven/DependencyFilterMojoTests.java
+++ b/spring-boot-tools/spring-boot-maven-plugin/src/test/java/org/springframework/boot/maven/DependencyFilterMojoTests.java
@@ -1,5 +1,5 @@
 /*
- * Copyright 2012-2016 the original author or authors.
+ * Copyright 2012-2017 the original author or authors.
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -18,13 +18,15 @@ package org.springframework.boot.maven;
 
 import java.util.Arrays;
 import java.util.Collections;
-import java.util.HashSet;
+import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Set;
 
 import org.apache.maven.artifact.Artifact;
 import org.apache.maven.plugin.MojoExecutionException;
 import org.apache.maven.plugin.MojoFailureException;
+import org.apache.maven.shared.artifact.filter.collection.ArtifactsFilter;
+import org.apache.maven.shared.artifact.filter.collection.ScopeFilter;
 import org.junit.Test;
 
 import static org.assertj.core.api.Assertions.assertThat;
@@ -64,27 +66,89 @@ public class DependencyFilterMojoTests {
 		assertThat(artifacts.iterator().next()).isSameAs(artifact);
 	}
 
-	private Artifact createArtifact(String groupId, String artifactId) {
+	@Test
+	public void filterScopeKeepOrder() throws MojoExecutionException {
+		TestableDependencyFilterMojo mojo = new TestableDependencyFilterMojo(
+				Collections.<Exclude>emptyList(), "", "",
+				new ScopeFilter(null, Artifact.SCOPE_SYSTEM));
+		Artifact one = createArtifact("com.foo", "one");
+		Artifact two = createArtifact("com.foo", "two", Artifact.SCOPE_SYSTEM);
+		Artifact three = createArtifact("com.foo", "three", Artifact.SCOPE_RUNTIME);
+		Set<Artifact> artifacts = mojo.filterDependencies(one, two, three);
+		assertThat(artifacts).containsExactly(one, three);
+	}
+
+	@Test
+	public void filterArtifactIdKeepOrder() throws MojoExecutionException {
+		TestableDependencyFilterMojo mojo = new TestableDependencyFilterMojo(
+				Collections.<Exclude>emptyList(), "", "one,three");
+		Artifact one = createArtifact("com.foo", "one");
+		Artifact two = createArtifact("com.foo", "two");
+		Artifact three = createArtifact("com.foo", "three");
+		Artifact four = createArtifact("com.foo", "four");
+		Set<Artifact> artifacts = mojo.filterDependencies(one, two, three, four);
+		assertThat(artifacts).containsExactly(two, four);
+	}
+
+	@Test
+	public void filterGroupIdKeepOrder() throws MojoExecutionException {
+		TestableDependencyFilterMojo mojo = new TestableDependencyFilterMojo(
+				Collections.<Exclude>emptyList(), "com.foo", "");
+		Artifact one = createArtifact("com.foo", "one");
+		Artifact two = createArtifact("com.bar", "two");
+		Artifact three = createArtifact("com.bar", "three");
+		Artifact four = createArtifact("com.foo", "four");
+		Set<Artifact> artifacts = mojo.filterDependencies(one, two, three, four);
+		assertThat(artifacts).containsExactly(two, three);
+	}
+
+	@Test
+	public void filterExcludeKeepOrder()  throws MojoExecutionException {
+		Exclude exclude = new Exclude();
+		exclude.setGroupId("com.bar");
+		exclude.setArtifactId("two");
+		TestableDependencyFilterMojo mojo = new TestableDependencyFilterMojo(
+				Collections.singletonList(exclude), "", "");
+		Artifact one = createArtifact("com.foo", "one");
+		Artifact two = createArtifact("com.bar", "two");
+		Artifact three = createArtifact("com.bar", "three");
+		Artifact four = createArtifact("com.foo", "four");
+		Set<Artifact> artifacts = mojo.filterDependencies(one, two, three, four);
+		assertThat(artifacts).containsExactly(one, three, four);
+	}
+
+	private static Artifact createArtifact(String groupId, String artifactId) {
+		return createArtifact(groupId, artifactId, null);
+	}
+
+	private static Artifact createArtifact(String groupId, String artifactId, String scope) {
 		Artifact a = mock(Artifact.class);
 		given(a.getGroupId()).willReturn(groupId);
 		given(a.getArtifactId()).willReturn(artifactId);
+		if (scope != null) {
+			given(a.getScope()).willReturn(scope);
+		}
 		return a;
 	}
 
 	private static final class TestableDependencyFilterMojo
 			extends AbstractDependencyFilterMojo {
 
+		private final ArtifactsFilter[] additionalFilters;
+
 		private TestableDependencyFilterMojo(List<Exclude> excludes,
-				String excludeGroupIds, String excludeArtifactIds) {
+				String excludeGroupIds, String excludeArtifactIds,
+				ArtifactsFilter... additionalFilters) {
 			setExcludes(excludes);
 			setExcludeGroupIds(excludeGroupIds);
 			setExcludeArtifactIds(excludeArtifactIds);
+			this.additionalFilters = additionalFilters;
 		}
 
 		public Set<Artifact> filterDependencies(Artifact... artifacts)
 				throws MojoExecutionException {
-			Set<Artifact> input = new HashSet<Artifact>(Arrays.asList(artifacts));
-			return filterDependencies(input, getFilters());
+			Set<Artifact> input = new LinkedHashSet<Artifact>(Arrays.asList(artifacts));
+			return filterDependencies(input, getFilters(this.additionalFilters));
 		}
 
 		@Override